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Overview of scRNA-seq data sets

Data set	Tissue	Protocol	Technology	Number of samples	Number of cells	Country	Published date	Journal
Arunachalam_2020	PBMC	10X 3'	CITE-seq	12	56639	US	2020-08-11	Science
Combes_2021	Whole blood	10X 5'	scRNA-seq	44	111990	US	2021-01-25	Nature
COMBAT_2022	PBMC	10X 5'	CITE-seq	140	783704	UK	2022-03-03	Cell
Bost_PBMC_2021	PBMC	10X 3'	scRNA-seq	33	50284	Israel	2021-03-05	Nature communications
Ren_2021	Multiple	Multiple	scRNA-seq	173	999462	China	2021-04-01	Cell
Schulte-Schrepping_2020	Multiple	Multiple	scRNA-seq	147	328780	Germany	2020-09-17	Cell
Liu_2021	PBMC	10X 5'	CITE-seq	70	411902	US	2021-04-01	Cell
Ramaswamy_2021	PBMC	10X 5'	scRNA-seq	38	271267	US	2021-05-11	Immunity
Schuurman_2021	PBMC	10X 5'	scRNA-seq	20	32384	Netherlands	2021-08-23	eLife
Silvin_2020	Whole blood	10X 3'	scRNA-seq	10	6960	France	2020-09-17	Cell
Stephenson_2021	PBMC	10X 5'	scRNA-seq	143	643071	UK	2021-04-20	Nature medicine
Sinha_2022	Whole blood	10X 3'	scRNA-seq	21	80994	Canada	2022-01-01	Nature medicine
Su_2020	PBMC	Seq-Well	CITE-seq	268	538210	US	2020-10-10	Cell
Thompson_2021	PBMC	10X 5'	scRNA-seq	8	63895	US	2021-03-16	Cell reports
Lee_2020	PBMC	10X 3'	scRNA-seq	20	59572	South Korea	2020-07-10	Science immunology
Wilk_2021	PBMC/Whole blood	Seq-Well	scRNA-seq	55	174753	US	2021-06-15	Journal of Experimental Medicine
Yao_2021	PBMC	10X 3'	scRNA-seq	17	69983	US	2021-01-05	Cell reports
Zhao_2021	PBMC	10X 5'	scRNA-seq	38	88374	China	2021-09-16	Signal Transduction and Targeted Therapy
Zhu_2020	PBMC	DNBelab C4	scRNA-seq	23	46022	China	2020-09-15	Immunity
Unterman_2022	PBMC	10X 5'	scRNA-seq	18	80789	US	2022-01-22	Nature communications

What is Covidscope?

Covidscope stores and provides over 4.8 million single-cell data from 20 published single-cell sequencing data sets. Anyone can explore the insights from our analysis and download the data provided here for further analysis.